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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jeremy Shipley | 12th | Chris Cusick | Tied for 4th | 7th |
| First Basemen | Danny Gutierrez | 2nd | Rich Brady | Tied for 8th | 1st |
| Second Basemen | Oscar Hernandez | 6th | Jonathan Anderson | 6th | 5th |
| Third Basemen | Wayne Wilbur | 15th | Mike Gummere | 10th | 12th |
| Shortstops | Dwaine Byrne | 10th | Itzik Lewinsohn | 9th | 9th |
| Left Fielders | Mike Webster | 5th | Matt Lamons | 6th | 5th |
| Center Fielders | Carlos Betancourt | 16th | Felício Toronho | 16th | 16th |
| Right Fielders | Luke Spradley | 10th | Danny Ybarra | 14th | 12th |
| Starting Pitchers | Jason Scothorn | 10th | Chris Duffy | 10th | 9th |
| Relievers | Nate Myers | 11th | Estevan Perez | 3rd | 8th |
| Closers | Bob Currell | 16th | Chris Gillespie | 13th | 16th |
