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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Oscar Londono | 2nd | Antonio Mendoza | 16th | 2nd |
| First Basemen | Victor Chacon | 1st | Eric Heckel | 14th | 1st |
| Second Basemen | Beau Morris | 13th | Beau Morris | 9th | 13th |
| Third Basemen | Bill Stewart | 10th | Daniel Pratley | 8th | 9th |
| Shortstops | Juan Reyna | 3rd | Chris Ferraro | 3rd | 3rd |
| Left Fielders | Ian Nelson | 4th | Jason Calore | 12th | 6th |
| Center Fielders | Tim Hutchens | 4th | Sam Clark | 4th | 3rd |
| Right Fielders | Lance Fisher | 13th | Rino Puglisi | Tied for 14th | 16th |
| Starting Pitchers | Siu-chung Chieu | 12th | Matt Skoczylas | 15th | 15th |
| Relievers | Andrew Carroll | 11th | Dustin Barnes | 16th | 15th |
| Closers | Cody Harbaugh | 11th | Kevin Kleman | 16th | 16th |
